Next: Structure of the pipeline Up: ncPRO-seq Annotation and Profiling Previous: How to browse the   Contents

How does-it work ?

• Structure of the pipeline
• Input pre-processing
  • Read pre-processing
  • Alignment pre-processing
  
  
• Read mapping
• Read annotation
• Annotation analyses
  • Reads with multiple mapping sites
  • Extension parameters
  • MiRNA read proportion
  • Overview of repeat/Rfam
  • Read profiling in each family
  • Logo sequences
  • Read coverage in each annotation item
  • Track files
  
  
• Enrichment analysis