Installation of ncPRO-seq

You can download the sources of ncPRO-seq and annotation files of different species from our project page in sourceforge (http://sourceforge.net/projects/ncproseq/files/).

To build the ncPRO-seq pipeline, extract the sources and species annotation file you choose, move the whole folder of species annotation files to annotation/ in the sources folder. Edit the config-system.txt file in the sources folder and change the paths of the required softwares. Once the config-system.txt is ready, go to the sources directory, and simply use the following command:

> make CONFIG_SYS=config-system.txt install

This command will install the sources in the folder specified in the config-system.txt file. Note that if some of the paths from the config-system.txt are not correct (or unknown), the installation program will try to find them on the system.