The local input files can be selected as shown in Figure 1. As previously described, the .fastq, .csfasta, and .fasta raw sequencing data can be selected, as well as .bam files for reads already aligned on the genome. These different file types can be mixed in a single analysis.
If a folder is selected, all the files within the folder will be analysed.
In order to avoid security issues (i.e. browsing the entire file server), the user has to enter the full path of its data.
As any standard web application, ncPRO-seq is run by the http user. Accordingly, it is your responsabilities to check if the http user can read your data.
Figure 1:
ncPRO-seq web interface: load input files
 |
Nicolas Servant
2012-05-31
